Question: Structure based phylogenic tree
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gravatar for edencoza
2.3 years ago by
edencoza0
edencoza0 wrote:

Hi,

I have to do a structure-based phylogenic tree of proteins for a student project in bioinformatics. Does someone know how to do that ?

Thank you in advance !

ADD COMMENTlink written 2.3 years ago by edencoza0

The key is finding a distance function between two genomes. Enjoy your HW.

ADD REPLYlink written 2.3 years ago by Asaf5.5k

See this rather old post :

Structure-Based Phylogenetic Analysis

and this artictle below:

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135507

Structure-Based Phylogenetic Analysis of the Lipocalin Superfamily

The following paper is 12 years old, but it may be useful as well:

Structure-Based Phylogeny of the Metallo-β-Lactamases

http://aac.asm.org/content/49/7/2778.full

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by natasha.sernova3.4k
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