Question: Structure based phylogenic tree
gravatar for edencoza
3.1 years ago by
edencoza0 wrote:


I have to do a structure-based phylogenic tree of proteins for a student project in bioinformatics. Does someone know how to do that ?

Thank you in advance !

ADD COMMENTlink written 3.1 years ago by edencoza0

The key is finding a distance function between two genomes. Enjoy your HW.

ADD REPLYlink written 3.1 years ago by Asaf7.0k

See this rather old post :

Structure-Based Phylogenetic Analysis

and this artictle below:

Structure-Based Phylogenetic Analysis of the Lipocalin Superfamily

The following paper is 12 years old, but it may be useful as well:

Structure-Based Phylogeny of the Metallo-β-Lactamases

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by natasha.sernova3.7k
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