Question: How to get complete database of matabolic network of Plasmodium falciparum
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gravatar for phemmysmart
2.4 years ago by
phemmysmart0 wrote:

Hello,

Where can I download complete database of metabolic pathways of Plasmodium falciparum. I have search through KEGG, PlasmoDB, PlasmoCyc, MPMP databases but no headway? Kindly assist me with a link.

Thank you

sequencing next-gen gene genome • 737 views
ADD COMMENTlink modified 2.4 years ago by Khader Shameer18k • written 2.4 years ago by phemmysmart0

Have you checked Reactome? It depends possibly on which format you need.

ADD REPLYlink written 2.4 years ago by Michael Dondrup46k

Database? Do you mean pathways and corresponding genes ?

If so,

T00095  pfa Plasmodium falciparum 3D7   Eukaryotes;Protists;Alveolates;Apicomplexans
T01051  pfd Plasmodium falciparum Dd2   Eukaryotes;Protists;Alveolates;Apicomplexans
T01052  pfh Plasmodium falciparum HB3   Eukaryotes;Protists;Alveolates;Apicomplexans

Kegg has three different strains (as above). Use GeneSCF to retrieve all pathways and corresponding genes using appropriate codes (pfa or pfd or pfh).

ADD REPLYlink written 2.4 years ago by EagleEye6.4k

Thank you for your response. I am working on identifying metabolic pathways of Plasmodium falciparum hence I specifically need a database containing all the reactions of the organism which i can analyse to obtain potential metabolic pathways. @Michael Dondrup, Reactome only provides pathway but what i need is a complete metabolic reaction database of Plasmodium falciparum. Kindly assist with a link to download the database

ADD REPLYlink written 2.4 years ago by phemmysmart0

Please be more specific. In your question you asked for metabolic pathways, reactome provides that, metabolic reactions is essentially the same thing. To download their database, please check out the Downloads section of Reactome.

ADD REPLYlink written 2.4 years ago by Michael Dondrup46k
0
gravatar for Khader Shameer
2.4 years ago by
Manhattan, NY
Khader Shameer18k wrote:

KBase have metabolic models of p. falciparum

ADD COMMENTlink written 2.4 years ago by Khader Shameer18k
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