I have 200 human fasta dna files from a region of chr6. Each sequence is 5,500 bp each. I've combined these fasta files and uploaded them into Clustal Omega to generate multiple sequence alignments and phylogenetic tree.
It worked well, however, I would like to convert these sequences into protein and highlights epitopes present in the sequences. What is the best tool to used for this purpose? What format do I need to select for the output?
Thank you so much for your advice.