Hello everyone !
In order to perform a test of the tool RATT (Rapid Annotation Transfer Tool : a tool that use an annotation of a close relative for a given species in order to transfer it on a non studied specie, it's a kind of an approximation of annotation. RATT Is used following this tutorial : http://avrilomics.blogspot.fr/2013/04/training-augustus-gene-finding-software.html ), I need a EMBL file that contain only a gene subset of my choice. I'm working, again, on D. melanogaster (close relative) and D. suzukii (non studied)
For example, in my EMBL files, I have numerous identifiers, like FBgn0000120, etc, then the translation of the genes as well as a lot of features, and at the end of the file, the whole nucleic sequence of the chromosome. I want to keep only few CDS features, like a subset of 10 genes that have to be in EMBL format at the end.
Do someone has any idea of how to do this ? I made some researches, but didn't find any thing interesting.
Thanks for your help !