Question: script to Extract longest isoform from stringTie assembly
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gravatar for Bioinfonext
2.6 years ago by
Bioinfonext170
Korea
Bioinfonext170 wrote:

I have done genome guided assembly using StringTie. In the output fasta header contain: Isoform name and then gene name.

I want extract longest sequence based on gene name.

fasta file header:

STRG.3.1 gene=STRG.3

TCTCATTATT

STRG.3.2 gene=STRG.3

TCTCATTATTGTCTT

Both isoforms belongs to same gene STRG3.

I want to extract the longest isofrom.

Thanks

rna-seq • 1.2k views
ADD COMMENTlink written 2.6 years ago by Bioinfonext170

Please search Biostars (using a google search). It will save you having to ask these types of questions: How to extract the longest isoform from multi fasta file

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by genomax74k
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