Question: script to Extract longest isoform from stringTie assembly
0
gravatar for Bioinfonext
3.9 years ago by
Bioinfonext320
Korea
Bioinfonext320 wrote:

I have done genome guided assembly using StringTie. In the output fasta header contain: Isoform name and then gene name.

I want extract longest sequence based on gene name.

fasta file header:

STRG.3.1 gene=STRG.3

TCTCATTATT

STRG.3.2 gene=STRG.3

TCTCATTATTGTCTT

Both isoforms belongs to same gene STRG3.

I want to extract the longest isofrom.

Thanks

rna-seq • 1.9k views
ADD COMMENTlink written 3.9 years ago by Bioinfonext320

Please search Biostars (using a google search). It will save you having to ask these types of questions: How to extract the longest isoform from multi fasta file

ADD REPLYlink modified 3.9 years ago • written 3.9 years ago by GenoMax96k

I don't think this said link solved the problem based on some feedback I have seen on it

ADD REPLYlink written 4 days ago by omotosoolatunde010
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