REST API to run pipeline ( not Galaxy)
3
0
Entering edit mode
4.7 years ago
sacha ★ 2.2k

I wonder if a framework exists to launch a pipeline / script from a user interface. I mean , something more general than galaxy. I imagine a server with REST endpoint to launch a pipeline and some websockets to monitor your run on live. The UI could be generate from Json-form specification.

interface pipeline galaxy launcher • 1.2k views
ADD COMMENT
3
Entering edit mode

I mean , something more general than galaxy

well galaxy... https://galaxyproject.org/develop/api/

ADD REPLY
0
Entering edit mode

Thanks, but i would like to know if alternative softwares exists and compare them. I m not sure galaxy provide websocket features. Similar tools should exist outside bioinformatics world.

ADD REPLY
1
Entering edit mode

You can use bioblend and not have to care about how the actual web API works. That allows you to check on a job's status.

ADD REPLY
0
Entering edit mode

What Pierre said. What you're describing is a stripped down version of Galaxy without any of the framework to aid reproducibility.

ADD REPLY
0
Entering edit mode
4.7 years ago
sacha ★ 2.2k

I found BioBoxes and BioContainers as pipeline containers. Would be awesome now to find a GUI lancher.

ADD COMMENT
1
Entering edit mode

I am really sorry but that is again ... Galaxy. http://biocontainers.pro/docs/faqs/galaxy-biocontainers/

ADD REPLY
0
0
Entering edit mode

Does any from this list have GUI for running biocontainers?

ADD REPLY
0
Entering edit mode
ADD COMMENT

Login before adding your answer.

Traffic: 3125 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6