Question: Lemon-Tree algorithms for identification of regulatory genes
0
gravatar for rajasekargutha
3.7 years ago by
India
rajasekargutha40 wrote:

I have performed WGCNA analysis and got 11 modules. in these modules, I want to identify regulatory genes. could anyone help me regarding this? I don't know how to do this.

rna-seq chip-seq next-gen R genome • 983 views
ADD COMMENTlink modified 3.5 years ago by Biostar ♦♦ 20 • written 3.7 years ago by rajasekargutha40
1

I changed this to a "question" because that's what it is. What's up with the "Lemon-tree" in your title? Is the data derived from Fools garden?

ADD REPLYlink written 3.7 years ago by WouterDeCoster45k

https://www.researchgate.net/publication/266379707 see this article.....

ADD REPLYlink written 3.7 years ago by rajasekargutha40

Does that paper not tell you how to use the algorithm?

ADD REPLYlink written 3.7 years ago by GenoMax94k
0
gravatar for Bioaln
3.7 years ago by
Bioaln340
France
Bioaln340 wrote:

Whether you decide to use the same methodology, try with: http://bioconductor.org/packages/release/bioc/html/goseq.html I don't know your R level, but browsing this vignetter, the use is pretty straightforward.

Hope this helps..

ADD COMMENTlink written 3.7 years ago by Bioaln340
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