I have 2 related fungal isolates and am working on variant calling. I have called variants using samtools-bcftools and have annotated them using snpEff. What tools can I use to draw a circular plot to represent snps and indels distribution?
I want to generate a plot like this Genome analysis of rice-blast fungus Magnaporthe oryzae field isolates, Figure 3
Here is the link to the paper https://doi.org/10.1016/j.gdata.2015.06.018