Question: cummeRbund installation error
0
gravatar for saj98
2.6 years ago by
saj98100
saj98100 wrote:

Hello every one

I am installed cummeRbund by using the following commands

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cummeRbund")

As well as I install

sudo apt-get install libcurl4-openssl-dev libxml2-dev

through Linux terminal

When I tried to library cummeRbund, it gave me error (there is no package called cummeRbund)

Does any body have an idea why I am getting his issue ?

Best Shaima

R • 884 views
ADD COMMENTlink modified 2.6 years ago by Santosh Anand5.0k • written 2.6 years ago by saj98100

Did biocLite("cummeRbund") complete successfully?

And just so our bases are covered, are you using a Linux distribution where apt-get install is supported?

ADD REPLYlink written 2.6 years ago by RamRS25k

Yes, it has done successfully

ADD REPLYlink written 2.6 years ago by saj98100

Take the first output of .libPaths() command inside R. This will be the PATH to a directory. Go to that PATH and check if there is a directory named cummeRbund there. In case not, do a fresh install and post all the messages that biocLite() reports while doing fresh install.

EDIT: In any case, you can do a fresh install and post all the messages reported by biocLite(), then only it is possible to understand if something went wrong

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by Santosh Anand5.0k
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