Question: Tool for predicting transcription factors from a gene list
0
gravatar for hkarakurt
3.4 years ago by
hkarakurt100
hkarakurt100 wrote:

Hello, I have about 150 human genes. I want to build a transcription factor-gene network so I need to find which TF binds to which gene?

Which online or desktop tools should I use to find possible transcription factors for my genes?

Thank you,

ADD COMMENTlink modified 3.4 years ago by YaGalbi1.5k • written 3.4 years ago by hkarakurt100
2
gravatar for Jean-Karim Heriche
3.4 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

EnsEMBL Regulation annotates regulatory features of the human genome, including transcription factor binding sites. There are also a few databases with promoter annotations e.g. TRED. Other database e.g. TRANSFAC provide information about transcription factors targets.

ADD COMMENTlink written 3.4 years ago by Jean-Karim Heriche23k
1
gravatar for YaGalbi
3.4 years ago by
YaGalbi1.5k
Biocomputing, MRC Harwell Institute, Oxford, UK
YaGalbi1.5k wrote:

https://gbiomed.kuleuven.be/apps/lcb/i-cisTarget/

ADD COMMENTlink written 3.4 years ago by YaGalbi1.5k
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