Tool for predicting transcription factors from a gene list
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7.1 years ago
hkarakurt ▴ 180

Hello,

I have about 150 human genes. I want to build a transcription factor-gene network so I need to find which TF binds to which gene?

Which online or desktop tools should I use to find possible transcription factors for my genes?

Thank you,

transcription-factors gene • 4.9k views
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7.1 years ago

EnsEMBL Regulation annotates regulatory features of the human genome, including transcription factor binding sites. There are also a few databases with promoter annotations e.g. TRED. Other database e.g. TRANSFAC provide information about transcription factors targets.

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