Question: Can I improve my de novo assembly with a reference genome?
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gravatar for cristian
2.0 years ago by
cristian220
cristian220 wrote:

Hi,

I have created a de novo assembly of a strain of C. elegans using pacbio. I have got 143 contigs in the assembly. Do you know if there is any software out there that I can use to scaffold the contigs together using the available reference genome of C. elegans?

Thanks.

C.

ADD COMMENTlink written 2.0 years ago by cristian220
1

Yes. See: Reference guided assembly methods

ADD REPLYlink written 2.0 years ago by genomax68k
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