Question: Detect CNVs from SNP data
1
gravatar for misbahabas
21 months ago by
misbahabas60
misbahabas60 wrote:

hello

Please tell me, is it possible to detect CNVs from SNP data?

thanks to all

cnv tool genome • 562 views
ADD COMMENTlink modified 21 months ago • written 21 months ago by misbahabas60
1
gravatar for guillaume.rbt
21 months ago by
guillaume.rbt530
France
guillaume.rbt530 wrote:

Hi,

By SNP data do you mean that you have a vcf file? From this kind of data it's difficult to call CNVs.

However, if you have the alignments from which the SNPs have been called (bam files) you can run CNV detection tools as pindel, CNVnator or breakdancer ( https://omictools.com/cnv-detection3-category ).

ADD COMMENTlink modified 21 months ago • written 21 months ago by guillaume.rbt530
0
gravatar for misbahabas
21 months ago by
misbahabas60
misbahabas60 wrote:

thanks for reply

yes,

I have VCF files contains only SNP data of non human genome , Now I want to detect CNVs from that data

ADD COMMENTlink written 21 months ago by misbahabas60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1902 users visited in the last hour