Installation error with funannotate?
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6.9 years ago
PK ▴ 130

Dear all, I have to do genome annotation for my genomic data (Aspergillus flavus). I am interested in funannotate pipeline but the installation is really hectic. When i install with brew for augustus it shows brew install augustus

Makefile:31: recipe for target 'filterBam' failed

make: * [filterBam] Error 1

make: Leaving directory '/tmp/augustus-20170612-24621-1wlkux3/augustus-3.2.2/auxprogs/filterBam/src'

READ THIS: https://github.com/Linuxbrew/brew/blob/master/docs/Troubleshooting.md#troubleshooting

Please do not report this issue to Homebrew/brew or Homebrew/core, which support macOS only.

/home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:226:in `raise_api_error': curl failed! (GitHub::Error)

curl: (7) Failed to connect to ftp.hgc.jp port 1080: Connection timed out curl: (3) <url> malformed from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:184:in open' from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:233:inissues_matching' from /home/praveenkumar/.linuxbrew/Library/Homebrew/utils/github.rb:272:in issues_for_formula' from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:368:infetch_issues' from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:364:in issues' from /home/praveenkumar/.linuxbrew/Library/Homebrew/exceptions.rb:419:indump' from /home/praveenkumar/.linuxbrew/Library/Homebrew/brew.rb:131:in rescue in <main>' from /home/praveenkumar/.linuxbrew/Library/Homebrew/brew.rb:30:in<main>'

How to overcome from this? please help me

RNA-Seq software error alignment next-gen • 1.9k views
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The protocol itself they have given like that. I will try

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working behind a proxy ?

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sorry for the late reply. yes, you are right i am using proxy. why? will it create any problem if i use proxy?

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