How to plot venn diagram from vcf-compare output ?
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7.3 years ago
sacha ★ 2.4k

i get the following output from vcf-compare by comparing two VCF :

VN      2172    NA12878/intersect2.vcf.gz (6.8%)
VN      29648   Coriell.varscan.snp.vcf.gz (20.7%)      NA12878/intersect2.vcf.gz (93.2%)
VN      113680  Coriell.varscan.snp.vcf.gz (79.3%)

I would like to plot a Venn diagram quickly. Any idea ? Online tool ? R tool ? command line tool ?

vcf-compare venn plot • 6.2k views
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The gplots lib in R contains a venn() function.

?venn
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I guess you could easily write an Rscript using the VennDiagram package for this purpose.

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yes... but I m lazzy :D !

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Then try venny

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Same. Googling "online venn diagram" also brings up some hits :)

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