How to plot venn diagram from vcf-compare output ?
1
0
Entering edit mode
4.0 years ago
sacha ★ 2.1k

i get the following output from vcf-compare by comparing two VCF :

VN      2172    NA12878/intersect2.vcf.gz (6.8%)
VN      29648   Coriell.varscan.snp.vcf.gz (20.7%)      NA12878/intersect2.vcf.gz (93.2%)
VN      113680  Coriell.varscan.snp.vcf.gz (79.3%)

I would like to plot a Venn diagram quickly. Any idea ? Online tool ? R tool ? command line tool ?

vcf-compare venn plot • 3.2k views
ADD COMMENT
0
Entering edit mode

The gplots lib in R contains a venn() function.

?venn
ADD REPLY
0
Entering edit mode

I guess you could easily write an Rscript using the VennDiagram package for this purpose.

ADD REPLY
0
Entering edit mode

yes... but I m lazzy :D !

ADD REPLY
0
Entering edit mode

Then try venny

ADD REPLY
0
Entering edit mode

Same. Googling "online venn diagram" also brings up some hits :)

ADD REPLY
0
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2556 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6