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• How Do I Download Protein Monomers From Pdb?
  Hi, I would like to download protein monomers (one chain only) from pdb. I have an input file wh...
• How to get PDB ID from sequence accession number ?
  I have a list of protein accession ids and if it is a known protein I would like to have the corr...
• How to get the PDB ID of a viral protein?
  How can I obtain the PDB ID for a protein from a Genbank flat file? I want to use PdbEfold for a...
• Primary sequence of PDB id
  I understand that every protein accession may have one or multiple PDB id, and I know each PDB i...
• Hydrophobic Core Of Protein, Pdb
  How do I know the hydrophobic core of a protein from its PDB structure?
• PDB ID To Ensemble ID
  How do i map a set of PDB ID's to ENSEMBLE ID's? This has to be done in bulk
• Downloading PDB files from BindingDB by script
  Hello everyone, I am trying to find a way to download PDB files of a proteins that have co-cryst...
• PDB id to Protein fold class
  Hello,  I have a list of pdb ids, is there anyway to find out to which class of fold (like only ...
• How To Calculate Rasa Of Proteins By Residue?
  Hello all, Is there any software available to calculate relative accessible surface area of prot...
• Protein Fold and PDB id
  Can a particular PDB id belong to multiple protein fold class? Thanks in advance
• Get a list of PDB id from a list of sequence protein number ?
  Hey guys , I hope you are doing well. I am working on a project of phosphorylation ,and I am cre...
• PDB id to DSSP
  Hi,I’m a masters student studying Bioinformatics, I’m new to the field. My problem is that I need...
• How To Obtain All The Binding Sites/Pockets Of A Specific Protein By Providing The Pdb Id?
  Hi all. I would like to find all the binding site and ligand of specific protein. I already kno...
• how to identify Protein Complexes based on PDB?
  Hello, I would like to know if anyone knows how to identify complex for a list of proteins ID us...
• Can I map gene symbols to PDB ids?
  I have a list of around 8,000 gene symbols, (like NAT2, ADA, CDH2 etc.) Can I map them to PDB (pr...
• Gene Name from PDB id
  How do i retrieve the gene names from a list of PDB id's ? say for example: MAPK3 from 2ZOQ I w...
• Human PDB ids
  How do i download all the PDB id's of genes of homosapiens/humans ? I would like to download the...
• Creating Image Of Many Pdb Files
  I have a list of >50 pdb ids. I need to make a single png image containing pictures of these p...
• How to get PDB IDs for many fasta sequences?
  Hello, there are 2600 untitled fasta sequences and I need to get PDB ID for each of them if it is...
• How Does One Programmatically (Python) Download Pdb Structures By Keyword
  I would like to download all hemagglutinin structures for influenza virus from the Protein Data B...
• Map plasmodb gene ID to pdb crystal structure if exist
  I have a [list of genes with their Plasmodb ids.][1] I want to map the genes to their correspondi...
• Cross-reference with PDB database
  Hi, I have a list of several thousand proteins and their UNIPROT IDs. I'm looking for an efficie...
• Downloading multiple PDB sequences
  Hello. I'm working in the field of protein analysis and I've been recently trying to download mu...
• Predicting Effect Of Single Mutation On Protein Structure
  Hello everybody, I am working in a wet lab on characterizing a protein sequence that do not have...