Question: Bacterial Type strain and Proxytype strain in NCBI
0
gravatar for VineethVenumadhavan
2.6 years ago by
India
VineethVenumadhavan30 wrote:

What is the best way to Identify type strains and proxytype strains among all bacterial refseq assemblies in NCBI?

Whether assembly_summary_refseq.txt in NCBI ftp [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/assembly_summary_refseq.txt] can help in this regard?

sequence assembly genome • 928 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by VineethVenumadhavan30

Thank you microfuge :)

ADD REPLYlink written 2.6 years ago by VineethVenumadhavan30

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized.

ADD REPLYlink written 2.6 years ago by genomax78k

Yes genomax. Thank you for your comment.

ADD REPLYlink written 2.6 years ago by VineethVenumadhavan30
1
gravatar for microfuge
2.6 years ago by
microfuge1.5k
microfuge1.5k wrote:

Seems so from the file link in your post. The last column (relation_to_type_material) has following possible entries-

relation_to_type_material

  • assembly from proxytype material
  • assembly from synonym type material
  • assembly from type material
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by microfuge1.5k

Thank you microfuge :)

ADD REPLYlink written 2.6 years ago by VineethVenumadhavan30
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