Any implementation of the edgeR in python
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3.7 years ago
Hamid ▴ 10

Hi Biostars, I wonder if there is an implementation of edgeR calcNormFactors (i.e. normalization) in python. I'm not comfortable with R.

Thanks

RNA-Seq next-gen sequencing normalization • 2.7k views
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I'm not comfortable with R.

Eh, does one ever get comfortable with R?

Anyway, as far as I know: no, there is no Python implementation. And using R is not that bad since the documentation for this package is decent.

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Thanks man :) Ok, so where is that documentation?

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Here.

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized.

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2.2 years ago
joonyoon.jay ▴ 10

https://github.com/r-bioinformatics/edgePy

Maybe this could help.

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