Entering edit mode
6.7 years ago
nazaninhoseinkhan
▴
520
Dear all,
I am faced with a strange problem.
Yesterday I run deseq2 on a few htseq count tables in Galaxy and I got the result.
Today when I tried to rerun deseq2 it does not recognize htseq count tables already present in my history.
Can anybody explain the source of this problem?
Thank you in advance
Nazanin
Minimally you should add here the commands that you use and the errors that you get. How do you expect us to guess what's going on?
When I want to run deseq2 in Galaxy, htseq count data are not appeared in the input boxes and I cannot run deseq2 at all.
Can you give a screenshot of your Galaxy interface?
sorry, I don't see anything. You can upload your screenshot to some public repository and share the link.
https://ibb.co/k5Kw45
I see that htseq-count suggests dataset 523, does it also suggest other datasets? E.g. 508?
There are 8 htseq counts in my history as well as other outputs like cuffdiff, cufflinks, deseq ,...
But It is so strange that Galaxy only realize the topmost data set (whatever it is).
I have not faced with this problem before.
If you are using galaxy, better to inspect the output files and post the error.