Hello Everyone! I am new here and new to field of genomics and informatics. Recently we generated ATAC-seq data of normal and cancer cells.. The data shows open regions in cancer cells compared to normal cells. I would like to know if there is a program out there to generate a list of genes that are in the neighborhood of these open regions. Which I would then feed to IPA or GSEA to see what function those genes enrich for. Ideally I would like to come up three lists , one for genes within 25kb of open regions, 2nd for genes within 75kb and 3rd for genes within 150kb
Please suggest how can I achieve that.