how to calculate p value
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4.9 years ago
Ben ▴ 50

I have two ChIP-seq data, including Case and Control sample. The reads in ChIP-seq followed Poisson distribution, so how to calculate the difference and p value in peaks identified in ChIP-seq.

RNA-Seq ChIP-Seq R • 2.9k views
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Hello Ben!

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I need to calculate the difference of two ChIP-seq, not one ChIP-seq and input

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Please explain your experimental setting and data better in your question by editing it. What is the difference between doing case-control and case-background analysis?

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Maybe, it is DiffBind what you are looking for

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