How to perform KEGG pathway analysis in R?
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6.4 years ago
MAPK ★ 2.1k

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

KEGG • 23k views
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6.4 years ago
Fabio Marroni ★ 3.0k

I would suggest KEGGprofile or KEGGrest

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6.4 years ago
roy.granit ▴ 880

You can also do that using edgeR

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That's great, I didn't know... very useful if you are already using edgeR!

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5.2 years ago

enrichR is a pretty good tool

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