Question: How to perform KEGG pathway analysis in R?
0
gravatar for MAPK
12 months ago by
MAPK1.3k
United States
MAPK1.3k wrote:

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

kegg • 3.3k views
ADD COMMENTlink modified 4 months ago by 32855860860 • written 12 months ago by MAPK1.3k
3
gravatar for Fabio Marroni
12 months ago by
Fabio Marroni1.8k
Italy
Fabio Marroni1.8k wrote:

I would suggest KEGGprofile or KEGGrest

ADD COMMENTlink written 12 months ago by Fabio Marroni1.8k
3
gravatar for roy.granit
12 months ago by
roy.granit740
Israel/LabWorm
roy.granit740 wrote:

You can also do that using edgeR

ADD COMMENTlink modified 12 months ago • written 12 months ago by roy.granit740

That's great, I didn't know... very useful if you are already using edgeR!

ADD REPLYlink written 12 months ago by Fabio Marroni1.8k
1
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 754 users visited in the last hour