Question: How to perform KEGG pathway analysis in R?
0
gravatar for MAPK
9 months ago by
MAPK1.2k
United States
MAPK1.2k wrote:

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

kegg • 2.0k views
ADD COMMENTlink modified 4 weeks ago by 32855860840 • written 9 months ago by MAPK1.2k
3
gravatar for Fabio Marroni
9 months ago by
Fabio Marroni1.8k
Italy
Fabio Marroni1.8k wrote:

I would suggest KEGGprofile or KEGGrest

ADD COMMENTlink written 9 months ago by Fabio Marroni1.8k
3
gravatar for roy.granit
9 months ago by
roy.granit680
Israel/LabWorm
roy.granit680 wrote:

You can also do that using edgeR

ADD COMMENTlink modified 9 months ago • written 9 months ago by roy.granit680

That's great, I didn't know... very useful if you are already using edgeR!

ADD REPLYlink written 9 months ago by Fabio Marroni1.8k
1
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