Question: How to perform KEGG pathway analysis in R?
0
gravatar for MAPK
14 months ago by
MAPK1.3k
United States
MAPK1.3k wrote:

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

kegg • 4.4k views
ADD COMMENTlink modified 6 months ago by 32855860860 • written 14 months ago by MAPK1.3k
3
gravatar for Fabio Marroni
14 months ago by
Fabio Marroni2.0k
Italy
Fabio Marroni2.0k wrote:

I would suggest KEGGprofile or KEGGrest

ADD COMMENTlink written 14 months ago by Fabio Marroni2.0k
3
gravatar for roy.granit
14 months ago by
roy.granit750
Israel/LabWorm
roy.granit750 wrote:

You can also do that using edgeR

ADD COMMENTlink modified 14 months ago • written 14 months ago by roy.granit750

That's great, I didn't know... very useful if you are already using edgeR!

ADD REPLYlink written 14 months ago by Fabio Marroni2.0k
1
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