Question: How to perform KEGG pathway analysis in R?
0
gravatar for MAPK
19 months ago by
MAPK1.4k
United States
MAPK1.4k wrote:

I have a couple hundred nucleotide sequences from a Fungus genome. I want to perform KEGG pathway analysis preferably using R package. Could anyone please suggest me any good R package? Thanks

kegg • 6.1k views
ADD COMMENTlink modified 4 months ago by stevenmarkgalway10 • written 19 months ago by MAPK1.4k
3
gravatar for Fabio Marroni
19 months ago by
Fabio Marroni2.1k
Italy
Fabio Marroni2.1k wrote:

I would suggest KEGGprofile or KEGGrest

ADD COMMENTlink written 19 months ago by Fabio Marroni2.1k
3
gravatar for roy.granit
19 months ago by
roy.granit790
Israel/LabWorm
roy.granit790 wrote:

You can also do that using edgeR

ADD COMMENTlink modified 19 months ago • written 19 months ago by roy.granit790

That's great, I didn't know... very useful if you are already using edgeR!

ADD REPLYlink written 19 months ago by Fabio Marroni2.1k
1
0
gravatar for stevenmarkgalway
4 months ago by
stevenmarkgalway10 wrote:

enrichR is a pretty good tool

ADD COMMENTlink written 4 months ago by stevenmarkgalway10
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