Question: Making a taxonomic plot for .biom file
0
gravatar for arunsaikirans
2.5 years ago by
arunsaikirans0 wrote:

HI all, I have made the heat maps for the biom file with respect to different levels of classification using QIIME.Now I am trying to create a taxonomic chart,more like a pie chart.

Please suggest some of the tools that can be used to create the above chart.

Kiran.

ADD COMMENTlink modified 2.5 years ago by lakhujanivijay4.8k • written 2.5 years ago by arunsaikirans0

Have you looked at KronaTools? I have never used it with QIIME though.

ADD REPLYlink written 2.5 years ago by Sej Modha4.6k
0
gravatar for lakhujanivijay
2.5 years ago by
lakhujanivijay4.8k
India
lakhujanivijay4.8k wrote:

Check out

http://qiime.org/scripts/plot_taxa_summary.html

prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME

ADD COMMENTlink written 2.5 years ago by lakhujanivijay4.8k

Hi Vijay, I have made pie chart using qiime but I am trying to create with Krona could you help me. I have installed Krona and kraken,but have no idea how to proceed,i have downloaded minikraken database(4gb),need help.

ADD REPLYlink written 2.2 years ago by arunsaikirans0

Have you looked at this tutorial explaining how to generate Krona plot from QIIME output?

ADD REPLYlink written 2.2 years ago by Sej Modha4.6k
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