Gene Expression Downstream Analysis
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4.2 years ago
always_learning ★ 1.1k

Hi,

I did Survival Analysis on a Group of genes using TCGA( Thanks to Biostar) and found that some of them have very significant role based on P Values in some Cancers. Now I just wanted to relate these Genes with some other genes very relevant for some important pathways, although my studied genes are not directly part of these pathways. basically, I just wanted to see that if the expression of these genes has anything to do with ( up regulation and down regulation ) with a particular set of gene(s) Since I am pretty new to such sort of analysis then can some guide me what sort of things I could do for such cases.

Thanks

gene Expression Survival Analysis • 1.8k views
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4.2 years ago
theobroma22 ★ 1.2k

Since you are working with human tissues, you have the EntrezIDs. Check out the SPIA package available on the Bioconductor website.

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4.1 years ago
always_learning ★ 1.1k

Thanks !! Is there any other tools or method or tutorials apart from this as well?

Thanks Najeeb

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