Question: question about FASTA file extracted from RSAT
gravatar for kanwarjag
5 months ago by
United States
kanwarjag860 wrote:
>Homo_sapiens-ENSG00000186115-CYP4F2-ENST00000011989    ENSG00000186115-ENST00000011989; downstream from -2000 to -1; size: 2000; location: chromosome:GRCh38:19:1:58617616:1 15878301 15880300 R

I used RSAT tool extract FASTA file. I get the header as above I pretty much understand most of the header information, however I am not sure what is referring to 1:58617616.


chip-seq • 209 views
ADD COMMENTlink modified 5 months ago by Pierre Lindenbaum105k • written 5 months ago by kanwarjag860
gravatar for Pierre Lindenbaum
5 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum105k wrote:

it's the size of the chr19

$ mysql --user=genome -A -D hg38 -e 'select chrom,size from chromInfo where chrom="chr19"'
| chrom | size     |
| chr19 | 58617616 |
ADD COMMENTlink written 5 months ago by Pierre Lindenbaum105k
$ wget -O- -q | grep -w chr19
chr19   58617616
ADD REPLYlink written 5 months ago by cpad01124.1k
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