Question: Finding ortholog genes
0
gravatar for mahnazkiani
3.1 years ago by
mahnazkiani50
United States
mahnazkiani50 wrote:

I have a question, I need to find the ortholog genes for the gene list that I have for the sorghum. I have my gene list, annotation file for sorghum that can be used for finding the arabidopsis orthologs and also zea_mays annaotation file that can be used next for finding the ortologs of arabidopsis genes in maize. I don't know how do I should a script for doing this job.

Thanks, Mahnaz

rna-seq R • 1.6k views
ADD COMMENTlink modified 3.1 years ago by fishgolden450 • written 3.1 years ago by mahnazkiani50
1
gravatar for h.mon
3.1 years ago by
h.mon31k
Brazil
h.mon31k wrote:

Try OrthoDB or Ensembl Compara.

ADD COMMENTlink written 3.1 years ago by h.mon31k
0
gravatar for fishgolden
3.1 years ago by
fishgolden450
fishgolden450 wrote:

Reciprocal best hit approach is the simple and easy way. (if you have whole gene sequences coded in the sorghum genome). https://www.google.co.jp/search?q=reciprocal+best+hit

ADD COMMENTlink written 3.1 years ago by fishgolden450
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