Question: problem in installing kissDE
0
gravatar for majeedaasim
2.3 years ago by
majeedaasim40
United States
majeedaasim40 wrote:

I need to install kissDE on my system. My system info is under,

R version 3.4.2 (2017-09-28) 
Platform: x86_64-pc-linux-gnu (64-bit)

Running under:

Ubuntu 16.04.3 LTS

I tried the following command in Rstudio

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source")

Following error is shown:

>  Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
>
(as ‘lib’ is unspecified)
>
> Warning: invalid package ‘kissDE_x.y.z.tar.gz’
>
> Error: ERROR: no packages specified
>
> Warning in install.packages :
>
>
> installation of package ‘kissDE_x.y.z.tar.gz’ had non-zero exit status

When I run the command

install.packages("kissDE")

following error is shown

> Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
> (as ‘lib’ is unspecified)
> Warning in install.packages :
> 
package ‘kissDE’ is not available (for R version 3.4.2)

I try the following link also http://kissplice.prabi.fr/tools/kissDE/ but it not working. When I click on

kissDE version 1.5.0 (2017-05-12)

It takes me to a new page which asks user name and password.

kissde snp • 738 views
ADD COMMENTlink modified 2.3 years ago by RamRS25k • written 2.3 years ago by majeedaasim40

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source") did you replace x.y.z by the correct version ?? like 1.5.0 ?

ADD REPLYlink written 2.3 years ago by Pierre Lindenbaum126k

yes, but it shows the same error

ADD REPLYlink written 2.3 years ago by majeedaasim40

Are you running the install.packages command in the directory where you download the kissDE tar.gz file ?

ADD REPLYlink written 2.3 years ago by clara.benoitp10
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