Question: problem in installing kissDE
0
gravatar for majeedaasim
16 months ago by
majeedaasim30
United States
majeedaasim30 wrote:

I need to install kissDE on my system. My system info is under,

R version 3.4.2 (2017-09-28) 
Platform: x86_64-pc-linux-gnu (64-bit)

Running under:

Ubuntu 16.04.3 LTS

I tried the following command in Rstudio

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source")

Following error is shown:

>  Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
>
(as ‘lib’ is unspecified)
>
> Warning: invalid package ‘kissDE_x.y.z.tar.gz’
>
> Error: ERROR: no packages specified
>
> Warning in install.packages :
>
>
> installation of package ‘kissDE_x.y.z.tar.gz’ had non-zero exit status

When I run the command

install.packages("kissDE")

following error is shown

> Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
> (as ‘lib’ is unspecified)
> Warning in install.packages :
> 
package ‘kissDE’ is not available (for R version 3.4.2)

I try the following link also http://kissplice.prabi.fr/tools/kissDE/ but it not working. When I click on

kissDE version 1.5.0 (2017-05-12)

It takes me to a new page which asks user name and password.

kissde snp • 520 views
ADD COMMENTlink modified 16 months ago by RamRS20k • written 16 months ago by majeedaasim30

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source") did you replace x.y.z by the correct version ?? like 1.5.0 ?

ADD REPLYlink written 16 months ago by Pierre Lindenbaum118k

yes, but it shows the same error

ADD REPLYlink written 16 months ago by majeedaasim30

Are you running the install.packages command in the directory where you download the kissDE tar.gz file ?

ADD REPLYlink written 16 months ago by clara.benoitp10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1731 users visited in the last hour