Question: problem in installing kissDE
0
gravatar for majeedaasim
20 months ago by
majeedaasim40
United States
majeedaasim40 wrote:

I need to install kissDE on my system. My system info is under,

R version 3.4.2 (2017-09-28) 
Platform: x86_64-pc-linux-gnu (64-bit)

Running under:

Ubuntu 16.04.3 LTS

I tried the following command in Rstudio

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source")

Following error is shown:

>  Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
>
(as ‘lib’ is unspecified)
>
> Warning: invalid package ‘kissDE_x.y.z.tar.gz’
>
> Error: ERROR: no packages specified
>
> Warning in install.packages :
>
>
> installation of package ‘kissDE_x.y.z.tar.gz’ had non-zero exit status

When I run the command

install.packages("kissDE")

following error is shown

> Installing package into ‘/home/aasim/R/x86_64-pc-linux-gnu-library/3.4’
> (as ‘lib’ is unspecified)
> Warning in install.packages :
> 
package ‘kissDE’ is not available (for R version 3.4.2)

I try the following link also http://kissplice.prabi.fr/tools/kissDE/ but it not working. When I click on

kissDE version 1.5.0 (2017-05-12)

It takes me to a new page which asks user name and password.

kissde snp • 600 views
ADD COMMENTlink modified 20 months ago by RamRS22k • written 20 months ago by majeedaasim40

install.packages("kissDE_x.y.z.tar.gz",repos=NULL, type="source") did you replace x.y.z by the correct version ?? like 1.5.0 ?

ADD REPLYlink written 20 months ago by Pierre Lindenbaum121k

yes, but it shows the same error

ADD REPLYlink written 20 months ago by majeedaasim40

Are you running the install.packages command in the directory where you download the kissDE tar.gz file ?

ADD REPLYlink written 20 months ago by clara.benoitp10
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