Question: R version and packages problems
0
gravatar for onemore100iq
2.6 years ago by
onemore100iq20
onemore100iq20 wrote:

I am trying to work with project that analyzed with simpleaffy package. I always get this strange message with whatever R version I change to

 <package ‘simpleaffy’ is not available (for R version 3.4.2)
 <package ‘simpleaffy’ is not available (for R version 3.2.2)

so, what R version fits for simpleaffy and genefilter??????

and same case for genefilter package I use

<install.packages("genefilter")>

but it gave me this error

" Error: package or namespace load failed for ‘genefilter’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):  there is no package called ‘Rcpp’"

so, what R version fits for simpleaffy and genefilter??????

Any help please is highly appreciated

R • 2.1k views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by onemore100iq20
2

Have you tried reading the installation instructions here? https://www.bioconductor.org/packages/release/bioc/html/simpleaffy.html

It's the first page when you google simpleaffy

ADD REPLYlink written 2.6 years ago by WouterDeCoster44k

I tried that before i post my question but thanks anyway

ADD REPLYlink written 2.6 years ago by onemore100iq20

Then why did you install.packages("genefilter")? That's not how you install bioconductor packages..

ADD REPLYlink written 2.6 years ago by WouterDeCoster44k

Thanks for your response. but I always start my work by <source("http: bioconductor.org="" bioclite.r")="" and="" still="" getting="" this="" error<="" p="">

ADD REPLYlink written 2.6 years ago by onemore100iq20
1

Bioconductor packages are installed with

source("https://bioconductor.org/biocLite.R")
biocLite("simpleaffy")
ADD REPLYlink written 2.6 years ago by Jean-Karim Heriche22k
1
gravatar for Jean-Karim Heriche
2.6 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche22k wrote:

This is because this package is not available on CRAN but on Bioconductor.

ADD COMMENTlink written 2.6 years ago by Jean-Karim Heriche22k
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