Hi all! I have a question: do you use any package or software for CNV analysis in cfDNA (and in particular with fetal DNA)? In alternative way: do you use any tool for this kind of analysis (or similar)?
The problem is that the fetal DNA in cfDNA from mother's blood is fragmented and I don't know if I can use the typical tool for CNV detection. I have to detect some specific deletion.
Can you help me?
I'm trying to use RAPIDR-Plus and FSDA with no success, do you use this software?