Question

How do I make a schema with all described variants within a gene?

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6.9 years ago

spanakorice ▴ 10

Hello. I would like to make a graphical representation of a transcript with all known variants. Something similar to image below.

Would anyone know how this can be done (apart from the "add custom tracks" of UCSC genome browser)?

Thank you in advance.

enter image description here

gene variants schema • 1.8k views

ADD COMMENT • link updated 6.9 years ago by WouterDeCoster 47k • written 6.9 years ago by spanakorice ▴ 10

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Well, 99.9% sure that this figure was made in powerpoint.

ADD REPLY • link 6.9 years ago by ATpoint 85k

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ADD REPLY • link 6.9 years ago by GenoMax 146k

score 3 · Answer 1 · 2017-12-06

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6.9 years ago

Pierre Lindenbaum 164k

you give a uniprot ID and fill a list of variant in a text area. You can later export and open it in inkscape.

enter image description here

ADD COMMENT • link 6.9 years ago by Pierre Lindenbaum 164k

score 2 · Answer 2 · 2017-12-06

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6.9 years ago

WouterDeCoster 47k

This is also a convenient tool to quickly get such an image for human variant data: MutationMapper

ADD COMMENT • link 6.9 years ago by WouterDeCoster 47k

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Only for human data?

ADD REPLY • link 6.9 years ago by GenoMax 146k

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Oh yeah, that's probably the case (clarified).

ADD REPLY • link 6.9 years ago by WouterDeCoster 47k

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Thank you. MutationMapper seems to do what I was searching for! I still have to try with my data.

ADD REPLY • link 6.9 years ago by spanakorice ▴ 10