Question: Free Array Cgh Visualisation And Segmentation Tools
gravatar for Danielsbrewer
9.6 years ago by
Danielsbrewer170 wrote:

I normally use R and Bioconductor for array CGH analysis, but I would like to find a GUI tool that I could recommend to my colleagues. Basically, it would need to do visualisation and segmentation, and if possible it would be free. I have come across CGH-Explorer already, but have yet to try it as it no longer seems to be updated.

Many thanks

software • 3.6k views
ADD COMMENTlink written 9.6 years ago by Danielsbrewer170
gravatar for Fred Fleche
9.6 years ago by
Fred Fleche4.3k
Paris, France
Fred Fleche4.3k wrote:

Updated link:

Old link broken:

ADD COMMENTlink modified 3.0 years ago by zx87549.2k • written 9.6 years ago by Fred Fleche4.3k
gravatar for Rm
9.6 years ago by
Danville, PA
Rm8.0k wrote:

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

ArrayCyGHt: a web application for analysis and visualization of array-CGH data.

Look into this article: A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. They have used "CGHviewer" which is available on request from the authors.




ADD COMMENTlink modified 8.3 years ago • written 9.6 years ago by Rm8.0k
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