Question: Free Array Cgh Visualisation And Segmentation Tools
4
gravatar for Danielsbrewer
8.6 years ago by
Danielsbrewer170
Danielsbrewer170 wrote:

I normally use R and Bioconductor for array CGH analysis, but I would like to find a GUI tool that I could recommend to my colleagues. Basically, it would need to do visualisation and segmentation, and if possible it would be free. I have come across CGH-Explorer already, but have yet to try it as it no longer seems to be updated.

Many thanks

software • 3.3k views
ADD COMMENTlink written 8.6 years ago by Danielsbrewer170
3
gravatar for Fred Fleche
8.6 years ago by
Fred Fleche4.3k
Paris, France
Fred Fleche4.3k wrote:

Updated link: http://bioinfo-out.curie.fr/projects/CAPweb/

Old link broken: http://bioinfo.curie.fr/CAPweb/

ADD COMMENTlink modified 24 months ago by zx87547.3k • written 8.6 years ago by Fred Fleche4.3k
3
gravatar for Rm
8.6 years ago by
Rm7.8k
Danville, PA
Rm7.8k wrote:

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

ArrayCyGHt: a web application for analysis and visualization of array-CGH data.

Look into this article: A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. They have used "CGHviewer" which is available on request from the authors.

SeeGH

aCGHViewer

RAN-aCGH

ADD COMMENTlink modified 7.3 years ago • written 8.6 years ago by Rm7.8k
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