I am interested on getting Correlations between genotype and tissue-specific gene expression levels. I am trying to replicate the same analysis pattern which was described in This Paper. I have also came across the following pipeline in gitHub GitHub-GTEx Pipeline, but i am not able to run this pipeline. My knowledge about scripts is less than that of a Beginner and i am a Biologist (Healthcare dept) and this script look too complicated for me to understand, I request you guys to help me (Tutorials) in executing this pipeline i have around 20 .fastq files (paired end). I would love to see the co-relations. Please help.
Thanks a lot for your kind help, Have a great day !!! Dav.