Hi every one
If we have this variant:
GT:GQ:DP:VF:GQX:PL:AD ==> 0/1:99:910:0.095:99:549,0,17114:824,86
And it did not
pass, it is reported as
I understand that this is because AD =824,86. which means we have 824 reads support the ref and 86 only support the alt.
But it is a stop gain variant, so I wanna double check before throwing it. Is it artefact? Should be ignored or still of interest? Does it mean the patient is mosaic for example?