Question: Cufflinks analysis for transcriptome assembly
0
gravatar for qudrat
2.1 years ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

Hello all, I have six gtf files from six different sample and I want to merge all these six files to produce non-redundant set of transcripts. The gtf files were produced from Cufflinks.

rna-seq alignment • 456 views
ADD COMMENTlink written 2.1 years ago by qudrat70

Go ahead with the cufflinks pipeline.. use Cuffmerge

ADD REPLYlink written 2.1 years ago by Prakash1.8k

As per the above; however, Cufflinks is outdated and has been superceded by Stringtie, produced by the same group.

ADD REPLYlink written 2.1 years ago by Kevin Blighe54k
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