Hi all, I'm wondering is there any database/datasets that have pure immune cell lines' RNA-Seq data (i.e., B cells, T cells, macrophages). I was only able to find those with collection of microarray data. Thanks!
Immune cell signatures defined from microarray datasets have been applied to RNA-Seq data, so it may still be worth considering the microarray gene expression datasets.
While I would also be curious to know about comparable RNA-Seq datasets, you could keep an eye on citations for these fairly popular microarray datasets:
Abbas et al 2005: GSE22886
Novershtern et al. 2011: GSE24759