Question: Cufflinks and StringTie
1
gravatar for qudrat
2.4 years ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to see the common transcripts between these two software.

rna-seq assembly • 1.3k views
ADD COMMENTlink modified 2.4 years ago by andrew.j.skelton736.0k • written 2.4 years ago by qudrat70
1
gravatar for Arup Ghosh
2.4 years ago by
Arup Ghosh2.5k
India
Arup Ghosh2.5k wrote:

Compare the list of the transcript from both of the outputs with R/Python or just use jvenn with the list of transcripts.

ADD COMMENTlink written 2.4 years ago by Arup Ghosh2.5k
0
gravatar for andrew.j.skelton73
2.4 years ago by
London
andrew.j.skelton736.0k wrote:

use bedtools

ADD COMMENTlink written 2.4 years ago by andrew.j.skelton736.0k
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