Dear all hi,
I have finalsed a de-novo assembly of a uncharacterised organism. To be able to check bacteria etc contamination we would like to use blast NT library.
When I try blast with default settings, I simply get 33Gb of data which I dont need it. My aim is to get single percentage output such like
Bacteria —> %33 similarity.
I have also attempted to get this result with megablast run with default settings. It did not help me neither.
Is this kind of summarised result possible ?
Thank you very much for the help,