whole genome sequence of GM12878 and K562

Question

[f68]

Hi everybody, I am looking for whole genome sequence of GM12878 and K562 but cannot find them. Any help pointing to the place where I can download it would be greatly appreciated.

[GenoMax]

Illumina has a boatload of NA12878 raw sequence data (from NovaSeq and other sequencers) available in public data section of BaseSpace.

[h.mon]

If you want assembled, annotated genomes, I don't think they exist (but maybe there is an assembled genome for K562, see this pre-print). You can get sequence data, see here and here for pointers.

Answer 1

[colindaven]

If I am not wrong, GM12878 is one of the trio listed here:

https://github.com/PacificBiosciences/DevNet/wiki/Datasets

Someone will have assembled it all somewhere, I am sure you can find a preprint or find it in NCBI.

Answer 2

[f68]

Searching for NA12878 (instead of GM12878) returned sequence from 1000 Genome Project.