Question: Error installing ligro (a tool for molecular dynamics)
0
gravatar for priyas772
16 months ago by
priyas7720
priyas7720 wrote:

Hello! I am trying to install LiGRO- Protein-ligand molecular dynamics (uses python 2.7) in ubuntu, i keep getting this error at the end.

mv: cannot stat '/root/ligro_temp/amber16': No such file or directory
<type 'exceptions.OSError'> Exception in Tk callback
  Function: <function install_all at 0x7ff8406417d0> (type: <type 'function'>)
  Args: ()
Traceback (innermost last):
  File "/usr/local/lib/python2.7/dist-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1753, in __call__
    return apply(self.func, args)
  File "./LiGRO_Install.py", line 264, in install_all
    install_ambertools()
  File "./LiGRO_Install.py", line 171, in install_ambertools
    os.chdir(path3)
<type 'exceptions.OSError'>: [Errno 2] No such file or directory: '/root/amber16'
molecular dynamics • 517 views
ADD COMMENTlink modified 16 months ago by Devon Ryan91k • written 16 months ago by priyas7720
1

If you do not have the AmberTools package installed, you should download it at http://ambermd.org/AmberTools16-get.html before proceeding with the installation. Locate the downloaded compressed file using the "Browse..." button (2).

ADD REPLYlink written 16 months ago by h.mon27k

Please provide your command line and what you've tried so far

ADD REPLYlink written 16 months ago by ATpoint21k

I installed only Tkinter and Pmw2.0.1 in python (which works fine), followed by installation.

root@andrea-Lenovo-G580:/home/andrea/Downloads# ./LiGRO_Install.py

Software screen pops up to load AmberTools16.tar file , it runs and shows the errors

ADD REPLYlink written 16 months ago by priyas7720

Please use the "Add reply" button to reply to a comment.

Did you specify /root/amber16 at some point during the installation? The error pertains to it not existing.

ADD REPLYlink written 16 months ago by Devon Ryan91k

No, i am not able to load files using /root

ADD REPLYlink written 16 months ago by priyas7720
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 868 users visited in the last hour