Hello guys, I need help with processing gnomad variant data.
I downloaded reference bgz file ( gnomad.exomes.r2.0.2.sites.vcf.bgz ) from here http://gnomad.broadinstitute.org/downloads
But I need to uncompress this bgz file into regular vcf - I need to process it locally variant by variant. Is there any way how to do it?
I tried to decompress the file with bgzip but I had this error:
bgzip --decompress gnomad.exomes.r2.0.2.sites.vcf.bgz [bgzip] gnomad.exomes.r2.0.2.sites.vcf.bgz.tbi: unknown suffix -- ignored
Is there any way how to get plain vcf from bgz file?
Thank you in advance