Question: Where can I download a txt file including all human snps rsids, chromosome, and locations?
1
gravatar for Huichen03
2.6 years ago by
Huichen0320
Huichen0320 wrote:

I tried to download data from useast.ensemble.org, while the downloaded file only contains SNPs in chromosome 1. Is there a better way to do that?

Thank you in advance!

snp R gene • 1.1k views
ADD COMMENTlink modified 2.6 years ago by GenoMax93k • written 2.6 years ago by Huichen0320

If your title is longer than the content of your post you may want to rewrite it.

ADD REPLYlink written 2.6 years ago by WouterDeCoster44k
2
gravatar for Pierre Lindenbaum
2.6 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum131k wrote:

ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/

ADD COMMENTlink written 2.6 years ago by Pierre Lindenbaum131k
2
gravatar for GenoMax
2.6 years ago by
GenoMax93k
United States
GenoMax93k wrote:

Ensembl's version at this link: ftp://ftp.ensembl.org/pub/release-92/variation/vcf/homo_sapiens/ They are split according to populations and also for 1000 genomes.

ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by GenoMax93k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1264 users visited in the last hour