Question: visualizing the file with BigWig format
0
gravatar for lkianmehr
2.0 years ago by
lkianmehr30
France
lkianmehr30 wrote:

Hello

I am trying to visualize my Bigwig file with UCSC or IGV, about UCSC I don't know any about constructing custom tracks and can't do it, and IGV can't show it. how do I Construct a custom track in UCSC? or about IGV?

thanks

ucsc rna-seq bigwig visualize • 1.6k views
ADD COMMENTlink written 2.0 years ago by lkianmehr30

Have you loaded the correct genome in the IGV? This tutorial might help. https://www.france-bioinformatique.fr/sites/default/files/EBA/V3-2014/Elodie_Giraud_visualisation-IGV_TP_EBA-2014-10.pdf

ADD REPLYlink written 2.0 years ago by Sej Modha4.7k

thanks for your reply. yes, I have. I think IGV cant open BigWig file, it works just with convert it's format to TDF.

ADD REPLYlink written 2.0 years ago by lkianmehr30

I can confirm that IGV can open BigWig files, I have used it in past with BigWig files, are you sure that your files are in correct format?

ADD REPLYlink written 2.0 years ago by Sej Modha4.7k

IGV definitely supports BW format. Please check if you have the current version of IGV, and point out how these BWs have been generated, and what the error message is.

ADD REPLYlink written 2.0 years ago by ATpoint35k
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