Question: How to present/evaluate RNAseq deconvolution results?
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gravatar for Sharon
2.3 years ago by
Sharon480
Sharon480 wrote:

Hi Everyone

It is my first time to try RNAseq deconvolution. What I understand is that it is an estimation of the immune cell content. I draw a boxplot for the content in all my controls vs. all my tumors for all the immune cells. For example the figure attached is for Bcells. But don't know how to judge whether there is a big difference or not. Do we know a ceiling for the normal estimation of the immune cells content so we can say it is lower in tumor or not, something like normal blood pressure, normal sugar level? Or how do we present/evaluate such results?

Screen Shot 2018 05 29 at 11 46 08 AM

Thanks

rna-seq • 1.0k views
ADD COMMENTlink modified 2.3 years ago by genomax89k • written 2.3 years ago by Sharon480

Past threads that may be useful:
Help understand RNAseq deconvolution results?
Deconvolution methods on RNAseq data

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by genomax89k

I have edited your post this time but you will find this useful: How to add images to a Biostars post so the images show up in your post without having to click a link.

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by genomax89k

Thanks genomax. I also took a look to those posts but still not clear though :(

ADD REPLYlink written 2.3 years ago by Sharon480
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