Question: DSK: readme and options
1
gravatar for sebastien.letort
29 days ago by
France
sebastien.letort50 wrote:

dsk readme shows command line with -file and -kmer-size.

The one I used (no --version, so don't know which) on genouest.org cluster doesn't understand those options. It seems to be only dsk file_in kmer_size.

So time for you to update the readme or for me to update dsk ?

gatb • 129 views
ADD COMMENTlink modified 28 days ago by pierre.peterlongo820 • written 29 days ago by sebastien.letort50

So time for you to update the readme

And to who is this addressed?

ADD REPLYlink written 29 days ago by WouterDeCoster30k

Looks like you need to contact these folks: https://www.genouest.org/support-contact/

ADD REPLYlink modified 29 days ago • written 29 days ago by genomax51k

Okay, my mistake. This is clearly not the place to report this problem. Sorry and thanks for not being rough ;)

ADD REPLYlink written 29 days ago by sebastien.letort50
1

No its not a mistake Sebastien. Biostars is used as the canonical place to ask for questions regarding GATB tools.
The developer team receives notifications for each new post that uses the GATB tag. You could have used the dsk tag though.

ADD REPLYlink written 28 days ago by pierre.peterlongo820
4
gravatar for pierre.peterlongo
28 days ago by
France
pierre.peterlongo820 wrote:

Sebastien,

You need to update your DSK version. https://github.com/GATB/dsk/releases

ADD COMMENTlink written 28 days ago by pierre.peterlongo820

pierre.peterlongo : The question was referring to genouest.org which I understand is some sort of a common research cluster in France. So this would ultimately have to be directed to the admins of that cluster.

ADD REPLYlink written 28 days ago by genomax51k
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