Question: DSK: readme and options
1
gravatar for sebastien.letort
14 months ago by
France
sebastien.letort70 wrote:

dsk readme shows command line with -file and -kmer-size.

The one I used (no --version, so don't know which) on genouest.org cluster doesn't understand those options. It seems to be only dsk file_in kmer_size.

So time for you to update the readme or for me to update dsk ?

gatb • 337 views
ADD COMMENTlink modified 14 months ago by pierre.peterlongo840 • written 14 months ago by sebastien.letort70

So time for you to update the readme

And to who is this addressed?

ADD REPLYlink written 14 months ago by WouterDeCoster40k

Looks like you need to contact these folks: https://www.genouest.org/support-contact/

ADD REPLYlink modified 14 months ago • written 14 months ago by genomax70k

Okay, my mistake. This is clearly not the place to report this problem. Sorry and thanks for not being rough ;)

ADD REPLYlink written 14 months ago by sebastien.letort70
1

No its not a mistake Sebastien. Biostars is used as the canonical place to ask for questions regarding GATB tools.
The developer team receives notifications for each new post that uses the GATB tag. You could have used the dsk tag though.

ADD REPLYlink written 14 months ago by pierre.peterlongo840
4
gravatar for pierre.peterlongo
14 months ago by
France
pierre.peterlongo840 wrote:

Sebastien,

You need to update your DSK version. https://github.com/GATB/dsk/releases

ADD COMMENTlink written 14 months ago by pierre.peterlongo840

pierre.peterlongo : The question was referring to genouest.org which I understand is some sort of a common research cluster in France. So this would ultimately have to be directed to the admins of that cluster.

ADD REPLYlink written 14 months ago by genomax70k
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