Question: DSK: readme and options
1
gravatar for sebastien.letort
5 months ago by
France
sebastien.letort70 wrote:

dsk readme shows command line with -file and -kmer-size.

The one I used (no --version, so don't know which) on genouest.org cluster doesn't understand those options. It seems to be only dsk file_in kmer_size.

So time for you to update the readme or for me to update dsk ?

gatb • 186 views
ADD COMMENTlink modified 5 months ago by pierre.peterlongo830 • written 5 months ago by sebastien.letort70

So time for you to update the readme

And to who is this addressed?

ADD REPLYlink written 5 months ago by WouterDeCoster34k

Looks like you need to contact these folks: https://www.genouest.org/support-contact/

ADD REPLYlink modified 5 months ago • written 5 months ago by genomax58k

Okay, my mistake. This is clearly not the place to report this problem. Sorry and thanks for not being rough ;)

ADD REPLYlink written 5 months ago by sebastien.letort70
1

No its not a mistake Sebastien. Biostars is used as the canonical place to ask for questions regarding GATB tools.
The developer team receives notifications for each new post that uses the GATB tag. You could have used the dsk tag though.

ADD REPLYlink written 5 months ago by pierre.peterlongo830
4
gravatar for pierre.peterlongo
5 months ago by
France
pierre.peterlongo830 wrote:

Sebastien,

You need to update your DSK version. https://github.com/GATB/dsk/releases

ADD COMMENTlink written 5 months ago by pierre.peterlongo830

pierre.peterlongo : The question was referring to genouest.org which I understand is some sort of a common research cluster in France. So this would ultimately have to be directed to the admins of that cluster.

ADD REPLYlink written 5 months ago by genomax58k
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