Question: Could somebody suggest free pathway visualization tool for omics data from plants?
0
gravatar for rimgubaev
2.1 years ago by
rimgubaev180
Russia/Moscow/Skoltech
rimgubaev180 wrote:

I've tried to visualize my data using MapMan and KEGG Mapper but the quality of their pathway diagrams is much to be desired. I've also used BioCyc which is nice however today it requires a subscription.

rna-seq vizualization pathways • 1.7k views
ADD COMMENTlink modified 2.1 years ago by bigmawen340 • written 2.1 years ago by rimgubaev180
1
gravatar for Antonio R. Franco
2.1 years ago by
Spain. Universidad de Córdoba
Antonio R. Franco4.5k wrote:

Have you tried Vanted ?

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Antonio R. Franco4.5k

Thanks, will try for sure!

ADD REPLYlink written 2.1 years ago by rimgubaev180
1
gravatar for bigmawen
2.1 years ago by
bigmawen340
United States
bigmawen340 wrote:

Pathview maps, integrates and renders a wide variety of biological data on relevant pathway graphs, and produce high quality graphics.
Pathview Web server:
https://pathview.uncc.edu/
Pathview R/Bioconductor package:
http://bioconductor.org/packages/release/bioc/html/pathview.html

ADD COMMENTlink written 2.1 years ago by bigmawen340

Nice one but there are only KEGG maps.

ADD REPLYlink written 2.1 years ago by rimgubaev180
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