Question: Could somebody suggest free pathway visualization tool for omics data from plants?
0
gravatar for rimgubaev
5 months ago by
rimgubaev70
rimgubaev70 wrote:

I've tried to visualize my data using MapMan and KEGG Mapper but the quality of their pathway diagrams is much to be desired. I've also used BioCyc which is nice however today it requires a subscription.

ADD COMMENTlink modified 5 months ago by bigmawen310 • written 5 months ago by rimgubaev70
1
gravatar for Antonio R. Franco
5 months ago by
Spain. Universidad de Córdoba
Antonio R. Franco3.9k wrote:

Have you tried Vanted ?

ADD COMMENTlink modified 5 months ago • written 5 months ago by Antonio R. Franco3.9k

Thanks, will try for sure!

ADD REPLYlink written 5 months ago by rimgubaev70
1
gravatar for bigmawen
5 months ago by
bigmawen310
United States
bigmawen310 wrote:

Pathview maps, integrates and renders a wide variety of biological data on relevant pathway graphs, and produce high quality graphics.
Pathview Web server:
https://pathview.uncc.edu/
Pathview R/Bioconductor package:
http://bioconductor.org/packages/release/bioc/html/pathview.html

ADD COMMENTlink written 5 months ago by bigmawen310

Nice one but there are only KEGG maps.

ADD REPLYlink written 5 months ago by rimgubaev70
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