Question: Could somebody suggest free pathway visualization tool for omics data from plants?
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gravatar for rimgubaev
13 months ago by
rimgubaev120
Russia/Moscow/Skoltech
rimgubaev120 wrote:

I've tried to visualize my data using MapMan and KEGG Mapper but the quality of their pathway diagrams is much to be desired. I've also used BioCyc which is nice however today it requires a subscription.

ADD COMMENTlink modified 13 months ago by bigmawen310 • written 13 months ago by rimgubaev120
1
gravatar for Antonio R. Franco
13 months ago by
Spain. Universidad de Córdoba
Antonio R. Franco4.1k wrote:

Have you tried Vanted ?

ADD COMMENTlink modified 13 months ago • written 13 months ago by Antonio R. Franco4.1k

Thanks, will try for sure!

ADD REPLYlink written 13 months ago by rimgubaev120
1
gravatar for bigmawen
13 months ago by
bigmawen310
United States
bigmawen310 wrote:

Pathview maps, integrates and renders a wide variety of biological data on relevant pathway graphs, and produce high quality graphics.
Pathview Web server:
https://pathview.uncc.edu/
Pathview R/Bioconductor package:
http://bioconductor.org/packages/release/bioc/html/pathview.html

ADD COMMENTlink written 13 months ago by bigmawen310

Nice one but there are only KEGG maps.

ADD REPLYlink written 13 months ago by rimgubaev120
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