Question: How to optimize the homology modeling?
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gravatar for sindy_zpro
10 months ago by
sindy_zpro0
sindy_zpro0 wrote:

I build a homology model used by Swiss-model, and evaluate the model by SAVEs, but how to further optimizing the model? what tools can I use?

homology modeling tool pdb • 394 views
ADD COMMENTlink modified 10 months ago by Shamim Sarhadi210 • written 10 months ago by sindy_zpro0
2

Please read this post on how to ask a good scientific question, and then consider to rephrase your question, providing more details in order to motivate people to answer.

ADD REPLYlink written 10 months ago by ATpoint16k
1
gravatar for pbpanigrahi
10 months ago by
pbpanigrahi180
pbpanigrahi180 wrote:

Do energy minimization to refine the model by relaxing the steric clashes. You can use spdbv viewer to do that.

ADD COMMENTlink written 10 months ago by pbpanigrahi180
0
gravatar for Shamim Sarhadi
10 months ago by
IRAN
Shamim Sarhadi210 wrote:

There are several tools that you could refine your 3D model e.g. TIGRESS, PREFMD that use different methodological approaches to refine the protein structure models.

ADD COMMENTlink written 10 months ago by Shamim Sarhadi210
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