Question: How to optimize the homology modeling?
0
gravatar for Laura_zz
17 months ago by
Laura_zz0
Laura_zz0 wrote:

I build a homology model used by Swiss-model, and evaluate the model by SAVEs, but how to further optimizing the model? what tools can I use?

homology modeling tool pdb • 550 views
ADD COMMENTlink modified 17 months ago by Shamim Sarhadi210 • written 17 months ago by Laura_zz0
2

Please read this post on how to ask a good scientific question, and then consider to rephrase your question, providing more details in order to motivate people to answer.

ADD REPLYlink written 17 months ago by ATpoint26k
1
gravatar for pbpanigrahi
17 months ago by
pbpanigrahi190
pbpanigrahi190 wrote:

Do energy minimization to refine the model by relaxing the steric clashes. You can use spdbv viewer to do that.

ADD COMMENTlink written 17 months ago by pbpanigrahi190
0
gravatar for Shamim Sarhadi
17 months ago by
IRAN
Shamim Sarhadi210 wrote:

There are several tools that you could refine your 3D model e.g. TIGRESS, PREFMD that use different methodological approaches to refine the protein structure models.

ADD COMMENTlink written 17 months ago by Shamim Sarhadi210
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