Question: deepTools - change line colors in profile plots above a heatmap
0
gravatar for mbk0asis
2.3 years ago by
mbk0asis570
Korea, Republic Of
mbk0asis570 wrote:

Hi.

I've generated a heatmap with profile plots above it using 'deepTools'. The heatmap is clustered into 2 groups using '--kmeans' option. The heatmap looks OK, but lines in the profile plots, especially, cluster2 lines are too faint to see. Is there a option to change the colours?

Thank you!

deepTools heatmap

ADD COMMENTlink modified 2.3 years ago by Devon Ryan97k • written 2.3 years ago by mbk0asis570
1

Note : How to add images to a Biostars post

ADD REPLYlink written 2.3 years ago by Bastien Hervé4.8k
1
gravatar for Devon Ryan
2.3 years ago by
Devon Ryan97k
Freiburg, Germany
Devon Ryan97k wrote:

There's no great way within plotHeatmap to change the profile colors. The simplest thing to do would be to save the output as a PDF and change this in Adobe Illustrator, since those lines should (hopefully) be distinct paths.

As an aside, please post the image somewhere, since with only 2 groups you shouldn't be getting light colors. Also please post your full command.

ADD COMMENTlink written 2.3 years ago by Devon Ryan97k
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