Here to introduce some tools to do Y-DNA and mtDNA Haplogroup Predictor
More tools are welcome to share.
I am looking for a good haplogroup classifier using either genotyped information (SNPs) or WGS information (sequencing). Which software products are the most popular (and accurate)?
if you want to use vcf file as software input, for mtDNA, I think haplogrep is the most popular classifier https://github.com/seppinho/haplogrep-cmd.git. However, as I know, there is no available tool to predict Y haplogroup when you provide vcf file containing snps information as input. As a suggestion, you can get haplogroup dict in ISOGG websitehttps://isogg.org/tree/, then write your own scripts to predict Y haplogroup like ypredict-master mentioned above .
Thanks so much for the reply. How about MToolBox?
I have no experience with the method about MToolBox myself.
https://github.com/N-damo/ypredict-master, the software is under development.