Question: IGV empty tracks render in blue
0
gravatar for roy.granit
16 months ago by
roy.granit810
Israel/LabWorm
roy.granit810 wrote:

I'm using IGV to display CNV data, and for some tracks there are no CNVs.. but for some reason IGV renders these 'empty' tracks in blue..

Any suggestions on how to force IGV to color these in White?

Thanks

igv cnv • 528 views
ADD COMMENTlink modified 14 months ago by Jim Robinson260 • written 16 months ago by roy.granit810
1

Please show a screenshot and give some details on what file format you loaded into CNV.

How to add images to a Biostars post

ADD REPLYlink modified 16 months ago • written 16 months ago by ATpoint26k

Here is the image..

Image

ADD REPLYlink modified 16 months ago • written 16 months ago by roy.granit810
0
gravatar for Jim Robinson
14 months ago by
Jim Robinson260
United States
Jim Robinson260 wrote:

Are these segmented copy number files? How did you determine that there are no CNVs on the tracks with blue bars. The blue bar indicates a CN < 2.

ADD COMMENTlink written 14 months ago by Jim Robinson260

Yes, these are segmented CNVs detected using QDNAseq, I know there are no CNVs on the blue tracks by looking at the raw SEG files

ADD REPLYlink written 14 months ago by roy.granit810
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