Question: IGV empty tracks render in blue
0
gravatar for roy.granit
8 months ago by
roy.granit790
Israel/LabWorm
roy.granit790 wrote:

I'm using IGV to display CNV data, and for some tracks there are no CNVs.. but for some reason IGV renders these 'empty' tracks in blue..

Any suggestions on how to force IGV to color these in White?

Thanks

igv cnv • 332 views
ADD COMMENTlink modified 5 months ago by Jim Robinson250 • written 8 months ago by roy.granit790
1

Please show a screenshot and give some details on what file format you loaded into CNV.

How to add images to a Biostars post

ADD REPLYlink modified 8 months ago • written 8 months ago by ATpoint14k

Here is the image..

Image

ADD REPLYlink modified 8 months ago • written 8 months ago by roy.granit790
0
gravatar for Jim Robinson
5 months ago by
Jim Robinson250
United States
Jim Robinson250 wrote:

Are these segmented copy number files? How did you determine that there are no CNVs on the tracks with blue bars. The blue bar indicates a CN < 2.

ADD COMMENTlink written 5 months ago by Jim Robinson250

Yes, these are segmented CNVs detected using QDNAseq, I know there are no CNVs on the blue tracks by looking at the raw SEG files

ADD REPLYlink written 5 months ago by roy.granit790
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