We got long reads sequenced from 10 bacteria using Pac Bio sequencing platform. 5 of them don't have reference bacterial strains and 5 of them have some bacterial strain closer to the subject.
I have to identify anti microbial resistant genes from these 10 bacteria. This is the first time, I am handling PacBio sequence.
Any assembler to handle long reads?As of now don't know the coverage of the sample. Guide me through a reference article if you have encountered for this requirement. I found HGAP from PacBio sequencing platform (https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/HGAP#implementations).
Celera® Assembler link is broken