I am trying to plot microarray data on 2D plane by PCA and t-SNE now.
So, I'd like to colorize each function of each gene, but is there any good way?
Multiple GO terms are allocated to each gene, and using a detailed GO term requires tens of thousands of colors for color coding.
If possible, I would like to paint about the rough function of each gene at around 20 colors.
Also, I am pleased that all work is completed on R.
I am sorry to request various requests.
Thank you.
I'm sorry. I did not write any information to tell. I am now working on time series data, and I thought that dimensionally reducing the matrix in the time series direction could be used as approximation of the expression tendency of the whole gene. But I don't think it's the right way to use GO term to color them. So I asked for Biostars.
You want to plot the genes in 'pseudo-time'?
I first learned the concept of 'pseudo-time', I will consult with a co-worker to see if I can write something new in that direction. Thanks